Suppose that you have installed MySQL and have edited your option file so that it contains the necessary InnoDB configuration parameters. Before starting MySQL, you should verify that the directories you have specified for InnoDB data files and log files exist and that the MySQL server has access rights to those directories. InnoDB does not create directories, only files. Check also that you have enough disk space for the data and log files.

It is best to run the MySQL server mysqld from the command prompt when you first start the server with InnoDB enabled, not from the mysqld_safe wrapper or as a Windows service. When you run from a command prompt you see what mysqld prints and what is happening. On Unix, just invoke mysqld. On Windows, use the --console option.

When you start the MySQL server after initially configuring InnoDB in your option file, InnoDB creates your data files and log files, and prints something like this:

InnoDB: The first specified datafile /home/heikki/data/ibdata1
did not exist:
InnoDB: a new database to be created!
InnoDB: Setting file /home/heikki/data/ibdata1 size to 134217728
InnoDB: Database physically writes the file full: wait...
InnoDB: datafile /home/heikki/data/ibdata2 did not exist:
new to be created
InnoDB: Setting file /home/heikki/data/ibdata2 size to 262144000
InnoDB: Database physically writes the file full: wait...
InnoDB: Log file /home/heikki/data/logs/ib_logfile0 did not exist:
new to be created
InnoDB: Setting log file /home/heikki/data/logs/ib_logfile0 size
to 5242880
InnoDB: Log file /home/heikki/data/logs/ib_logfile1 did not exist:
new to be created
InnoDB: Setting log file /home/heikki/data/logs/ib_logfile1 size
to 5242880
InnoDB: Doublewrite buffer not found: creating new
InnoDB: Doublewrite buffer created
InnoDB: Creating foreign key constraint system tables
InnoDB: Foreign key constraint system tables created
InnoDB: Started
mysqld: ready for connections

At this point InnoDB has initialized its tablespace and log files. You can connect to the MySQL server with the usual MySQL client programs like mysql. When you shut down the MySQL server with mysqladmin shutdown, the output is like this:

010321 18:33:34  mysqld: Normal shutdown
010321 18:33:34  mysqld: Shutdown Complete
InnoDB: Starting shutdown...
InnoDB: Shutdown completed

You can look at the data file and log directories and you see the files created there. The log directory also contains a small file named ib_arch_log_0000000000. That file resulted from the database creation, after which InnoDB switched off log archiving. When MySQL is started again, the data files and log files have been created already, so the output is much briefer:

InnoDB: Started
mysqld: ready for connections

Starting from MySQL 4.1.1, you can add the option innodb_file_per_table to my.cnf to make InnoDB store each table to its own .ibd file in the same MySQL database directory where the .frm file is created. See Section 14.2.4.1, “Using Per-Table Tablespaces”.